FastQCFastQC Report
Wed 31 May 2023
EGAF00007944568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368982
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37801.0244402165959317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14310.3878237962827455No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11650.31573355881858733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9260.2509607514729716No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9140.24770856030917496No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7720.20922429820424845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7300.19784162913096034No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6470.17534730691470046No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5050.13686304480977393No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4910.13306882178534454No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4700.1273774872487005No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3820.1035280853808587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)