FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007945885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007945885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34538850
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTATACATCTCGTATGC612280.17727283913621905TruSeq Adapter, Index 2 (97% over 37bp)
TATATATATATATATATATATATATATATATATATATATATATATATATA492610.1426248992077038No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATAT433510.12551373308607555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)