FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007945899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007945899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32846955
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC1118450.3405034043490485TruSeq Adapter, Index 2 (100% over 50bp)
TATATATATATATATATATATATATATATATATATATATATATATATATA723900.2203857252521581No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATAT714420.21749961297782397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)