FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476486
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44920.9427349386970447No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44870.9416855899228938No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31530.6617193369794706No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT29110.6109308563105736No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16050.3368409565023946No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG14980.3143848927355683No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13920.2921386987235721No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12990.272620811524368No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12690.2663247188794634No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11050.23190607908731842No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10920.22917777227452643No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10590.2222520703651314No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9500.1993762670886448No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9350.1962282207661925No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9240.19391965346306084No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9130.19161108615992914No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8940.18762356081815626No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG7090.14879765617457805No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7040.1477483074004273No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6970.14627921911661623No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6830.1433410425489941No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6730.14124234500069258No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6290.13200807578816587No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5990.1257119831432613No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5880.12340341584012962No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5470.11479875589209337No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5150.1080829237375285No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5090.10682370520854757No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5010.10514474716990635No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4820.10115722182813347No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4790.10052761256364301No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4770.10010787305398271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)