FastQCFastQC Report
Wed 31 May 2023
EGAF00007946265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543652
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29020.5337973556613422No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20640.3796546320072399No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16790.3088372709012383No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15880.292098621912547No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14780.27186509016797505No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14470.26616291303995937No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14230.26174832429568917No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13390.24629726369074334No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12650.2326856150625768No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12370.22753526152759487No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG11440.2104287301435477No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11210.2061980825969554No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG11110.20435867062017615No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10910.20067984666661765No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10830.19920831708519418No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10230.18817184522451863No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9930.18265360929418084No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9590.17639960857313133No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9460.17400837300331828No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9330.17161713743350526No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9100.16738648988691296No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8590.1580054888053387No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8440.15524637084016982No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG8190.15064784089822164No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8040.14788872293305275No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7640.1405310750259357No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7610.13997925143290194No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7610.13997925143290194No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7580.13942742783986814No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6850.12599972040937954No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6650.12232089645582099No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG6590.12121724926975345No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6480.11919389609529626No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6310.11606689573477151No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6280.11551507214173772No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT6210.11422748375799224No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6120.1125720129788909No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5960.10962895381604408No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5940.10926107142068824No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5930.10907713022301031No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5550.1020873647112491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)