FastQCFastQC Report
Sun 21 May 2023
EGAF00007946266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543652
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35280.6489445454077241No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29360.5400513563823917No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27890.5130120003237365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17380.31968980156423593No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16530.3040547997616122No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15160.2788548556797363No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15120.2781190908890246No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14550.2676344426213828No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13870.25512644117928385No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12790.23526079183006776No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA12260.22551190835313767No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11850.2179703192483427No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG11840.21778637805066475No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11340.20858931816676846No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11330.20840537696909053No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11120.20454261181785408No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10970.20178349385268518No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10800.1986564934921604No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10440.1920346103757551No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9330.17161713743350526No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9270.1705134902474377No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC8840.16260401874728686No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8690.15984490078211797No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8620.15855731239837248No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8500.15635001802623738No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG8230.15138360568893336No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7960.14641719335162937No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7960.14641719335162937No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7750.1425544282003929No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7720.1420026046073591No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7640.1405310750259357No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7510.13813983945612265No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7300.13427707430488622No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG7280.13390919190953038No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7000.12875883837454843No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6960.12802307358383672No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6930.12747124999080295No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6860.12618366160705746No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6740.12397636723492235No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6700.12324060244421065No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.1131238365719247No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6130.11275595417656883No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6060.11146836579282336No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5790.10650195345551934No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5730.10539830626945179No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5630.10355889429267252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)