FastQCFastQC Report
Wed 31 May 2023
EGAF00007946267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497100
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT34490.6938241802454235No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG23110.46489639911486624No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21550.4335143834238584No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19650.3952926976463488No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT17880.3596861798430899No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG16380.3295111647555824No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15660.31502715751357874No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA14600.2937034801850734No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13650.27459263729631866No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13490.27137396902031785No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12380.24904445785556228No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11170.22470327901830617No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10320.20760410380205188No Hit
TTCCGCTTTCGGTTTACGCGGGGCGCGTTTGCGTGGAGTTTTTG9570.19251659625829814No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA9530.19171192918929794No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9520.19151076242204787No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9480.19070609535304767No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8180.16455441561054115No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7970.1603299134982901No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC7470.15027157513578757No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7320.1472540736270368No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7100.14282840474753572No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6840.13759806879903438No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6740.1355864011265339No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6490.13055723194528265No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6430.12935023134178233No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6290.12653389660028164No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6180.12432106216053108No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6170.12411989539328104No Hit
CACGCTAGATACCATCTGGCAGAACATGGAGATGTCCTGGCCAT6020.12110239388453028No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5800.11667672500502917No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5750.11567089116877893No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5700.11466505733252867No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG5650.11365922349627841No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5360.10782538724602696No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5300.10661838664252664No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5260.10581371957352646No Hit
AACGCCGCGCAGGTCTGCTTCACCACCTTCGCCTTCGTCCTGGT5230.1052102192717763No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.10118688392677529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)