FastQCFastQC Report
Wed 31 May 2023
EGAF00007946269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486715
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT17040.3501022158758206No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11970.2459344791099514No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11570.23771611723493213No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9950.20443175164110414No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9740.20011711165671903No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9220.18943324121919397No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8180.16806550034414391No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT7320.15039602231285248No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7090.1456704642347164No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7030.14443770995346353No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6760.13889031568782553No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6490.1333429214221875No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6260.12861736334405144No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6160.12656277287529663No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5830.11978262432840574No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5790.1189607881409038No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5500.11300247578151484No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5420.11135880340651098No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4950.10170222820336336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)