FastQCFastQC Report
Sun 21 May 2023
EGAF00007946270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486715
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGCCCCGAAAGCTGACGCGCAACAGAACA18650.3831811224227731No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18340.37681189196963316No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13240.27202777806313755No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12880.2646312523756202No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12180.2502491190943365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11790.24223621626619274No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10410.21388286779737628No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10100.20751363734423633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9840.20217170212547386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8600.17669478031291413No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7800.1602580565628756No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7360.1512178585003544No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG6970.14320495567221062No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6690.13745210235969715No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.12861736334405144No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6220.12779552715654952No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5940.12204267384403604No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5800.1191662471877793No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5600.11505706625026967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)