FastQCFastQC Report
Sun 21 May 2023
EGAF00007946271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574457
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32050.5579181731617858No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20910.36399591266187026No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT20660.3596439768337752No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15190.26442362091505545No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA14180.24684180016955143No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11610.20210389985673427No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG11530.20071128039174385No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10500.18278130477999224No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9520.16572171633385963No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8460.1472695084227366No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7800.13578039783656565No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7380.12846914564536596No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7250.12620613901475652No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6840.11906896425668066No Hit
ATCGCTAATGTTGGTTTCATCAGAATAGTGAGAACGGTTGGAGT6310.10984286030111913No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6220.10827616340300492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)