FastQCFastQC Report
Wed 31 May 2023
EGAF00007946273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549226
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT31550.5744447640861867No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20690.37671195464162294No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT20360.37070349910601463No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15160.27602480581764155No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA12510.22777508712260525No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11120.20246674410898247No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10950.19937147913609335No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG10220.18608004719368712No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9220.16787260617669228No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7790.1418359655223897No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7710.14037937024103012No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7240.13182187296304254No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7040.12818038475964358No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6800.12381059891556483No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6370.11598139927825703No Hit
ATCGCTAATGTTGGTTTCATCAGAATAGTGAGAACGGTTGGAGT5990.109062571691799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)