FastQCFastQC Report
Sun 21 May 2023
EGAF00007946274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549226
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47840.8710439782530324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31550.5744447640861867No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22210.40438726498745503No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20720.3772581778721328No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19800.36050733213649755No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18210.3315575009194758No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC12830.23360146824804362No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12110.22049211071580735No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG11210.204105413800512No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9790.17825084755637932No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7950.14474915608510885No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7230.13163979855287258No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7150.130183203271513No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6890.12544926860709435No Hit
AGCACTGTCCCGTACTCCCCGCCGCAGTCCG6090.11088331579349849No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6070.11051916697315858No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5880.10705975317992958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)