FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479631
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13720.2860532367590919No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12380.25811509264413685No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8170.17033928165610646No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT8020.16721187746413388No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6350.13239344412683918No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5880.1225942443253251No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5770.1203008145845452No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5720.11925834652055435No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5600.11675642316697629No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5500.11467148703899455No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5400.11258655091101284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)