FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479631
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42170.8792175651698909No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28570.5956662517643773No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13180.2747945816679906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12460.2597830415465222No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10150.21162101699014452No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA8120.1692968135921156No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6380.13301892496523368No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5930.12363671238931595No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5610.11696491677977444No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4930.10278735110949876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)