FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44280.9261312061039325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41270.863176036041312No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT31400.6567416411848122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27540.5760084330646409No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17010.3557699145399253No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10380.21710121769103025No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8980.18781974324329978No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC8640.1807085280202795No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8420.17610715346420758No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7320.1531002806838479No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6260.1309300214591377No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.12214557912481856No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5630.117753357957659No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5600.1171258977909219No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5250.1098055291789893No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5040.10541330801182973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)