FastQCFastQC Report
Sun 21 May 2023
EGAF00007946279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491863
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32120.6530273673766882No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30480.6196847496152385No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28340.5761766996094441No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14160.28788504115983515No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14030.2852420287763056No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT13730.2791427694296989No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13510.27466997924218733No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12750.2592185222307838No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC11540.23461817619947017No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9810.19944578063403837No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9230.18765387923059876No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8810.1791149161453494No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7880.16020721217086872No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7830.15919066894643427No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7710.1567509652077916No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7650.15553111333847025No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7590.15431126146914892No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7480.15207486637539316No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7470.15187155773050626No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7420.15085501450607183No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7280.14800869347765538No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7190.14617891567367336No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7010.14251936006570934No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6850.13926642174751913No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6650.13520024884978132No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6640.13499694020489447No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6220.12645797711964513No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6050.12300173015656798No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5970.12137526099747287No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5700.11588592758552686No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5560.11303960655711041No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5530.11242968062244975No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5390.1095833595940333No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5300.10775358179005129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)