FastQCFastQC Report
Wed 31 May 2023
EGAF00007946284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG38570.7477835014569856No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA37810.733048851181971No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23450.4546415117751182No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21000.4071416523359268No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC19200.37224379642141875No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG18730.3631315784881861No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17440.338121448416122No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC16360.3171827348674172No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16220.31446845718517774No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG15330.2972134062052265No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13620.26406044308644394No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13490.26154004238150724No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13430.2603767805176903No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA13260.25708087190354234No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11650.22586667855778794No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10370.20105042546302668No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10080.19542799312124484No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10040.19465248521203354No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9900.19193820752979404No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG9670.18747903705182914No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9530.18476475936958964No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG9390.1820504816873501No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8700.16867297025345537No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8660.16789746234424408No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC8300.1609178911613425No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8240.15975462929752554No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8130.1576219825471945No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8080.1566525976606804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7880.15277505811462394No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7840.15199955020541264No Hit
AAAGCCATTATCAACCTGGCAGGCTCTTCCT7840.15199955020541264No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7800.15122404229620137No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7620.14773425670475057No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7480.14501997902251104No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7180.13920366970342637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7010.1359077610892784No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6710.13009145177019374No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6410.12427514245110909No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6170.11962209499584134No Hit
AGCGGTTTCCGTAAAACCAACATGTCTCTGG6160.1194282180185385No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG6100.11826495615472159No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5950.11535680149517924No Hit
TCTGAAAACACCCAACAGACCAGCACGAAAC5740.11128538497181999No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5690.11031600008530587No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.10760172240306637No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5370.10411193681161554No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.1027547979704958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)