FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460710
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20190.4382366347593931No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18250.3961277159167372No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14990.32536736775845976No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13960.3030105706409672No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8440.18319550259382258No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA8440.18319550259382258No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7500.16279221202057692No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6880.14933472249354257No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5640.12241974343947384No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5590.12133446202600333No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4630.1004970588873695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)