FastQCFastQC Report
Wed 31 May 2023
EGAF00007946287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505231
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT37440.7410471645643281No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29010.5741927949789305No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA25990.5144181572389659No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT25380.5023444721325493No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22280.44098640028026787No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20320.4021922645285028No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19050.3770552479954714No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17290.3422196975244987No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16740.3313335880023197No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT14500.2869974328574454No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14420.28541399874512846No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14280.2826429890485738No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13150.26027698221209705No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12840.2541411750268689No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12770.2527556701785916No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12380.24503642888104646No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG11030.21831597823569812No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10650.21079466620219267No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10370.20525264680908337No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA9750.19298103243862708No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9540.18882451789379512No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9500.18803280083763665No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT8810.17437568161890304No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC7650.15141588699030742No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7410.14666558465335658No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7210.14270699937256423No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7160.14171735305236616No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6880.13617533365925685No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6420.12707058751343445No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6390.1264767997213156No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6060.11994513400800821No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5700.11281968050258198No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5380.10648594405331423No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5370.1062880147892746No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5370.1062880147892746No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5340.10569422699715576No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5230.10351700509271997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)