FastQCFastQC Report
Sun 21 May 2023
EGAF00007946288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505231
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47280.9358095603793116No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC43430.859606793724059No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40490.8014155900964113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT37780.747776759541675No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA27760.5494516369739783No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA26210.5187726010478375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22000.43544438088715853No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19750.3909102964782446No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18990.3758676724112337No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16580.32816671977768586No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG15740.31154066159835797No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14270.28244505978453416No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13850.2741320306948703No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13840.27393410143083063No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13350.2642355674928894No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT11380.22524350247708474No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10320.2042630004888853No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9820.1943665372869044No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9760.19317896170266668No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC9690.1917934568543894No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9510.18823073010167626No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9210.18229285218048774No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7780.15398896742282242No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA7660.15161381625434703No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.14330078716468309No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7210.14270699937256423No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7020.1389463433558115No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6920.13696705071541532No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6790.13439397028290032No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6580.13023745573806833No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6460.1278623045695929No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6330.12528922413707788No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5890.1165803365193347No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.11618447799125549No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5550.10985074154198772No Hit
ATGGCTTCCGAAAACAAACAGCGTCCGGGCT5450.10787144890159156No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5320.10529836846907652No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5190.1027252880365615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)