FastQCFastQC Report
Sun 21 May 2023
EGAF00007946290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451124
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42530.9427563153368032No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27320.6055984607336342No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17600.3901366364901889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16480.36530975962263146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13280.2943758257153244No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11740.26023887002243284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11620.2575788475009088No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11540.2558054991532262No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11370.2520371339144005No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8580.1901916102889671No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8370.1855365708763001No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7970.1766698291378867No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7490.16602973905179064No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7410.16425639070410797No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7100.15738466585683758No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5820.12901109229391475No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.12036601909896169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)