FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418925
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24710.5898430506653936No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22530.5378050963776332No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18960.4525869785761174No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17780.4244196455212747No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17500.41773587157605774No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15890.3793041713910605No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14210.3392015277197589No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13340.3184340872471206No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12510.298621471623799No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12360.2950408784388614No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA11850.2828668616100734No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10960.26162200871277674No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9010.21507429730858746No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8950.2136420600346124No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8850.21125499791132063No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8330.1988422748702035No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8050.19215850092498657No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8000.1909649698633407No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7840.18714567046607386No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7450.17783612818523603No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7440.17759742197290684No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6750.1611266933221937No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6480.15468162558930598No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6120.14608820194545563No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5970.142507608760518No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5910.14107537148654292No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5910.14107537148654292No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5430.1296174732947425No Hit
CAGGATCATCAGGCAATCGGCCAGAGCGCGATGAGCACCCGCAG5390.1286626484454258No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5350.12770782359610908No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4810.11481768813033359No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4410.10526943963716656No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4380.10455332100017903No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4250.10145014023989975No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4250.10145014023989975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)