FastQCFastQC Report
Sun 21 May 2023
EGAF00007946292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418925
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42251.008533747090768No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40520.9672375723578206No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29780.7108671003162857No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24870.5936623500626603No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18480.441129080384317No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18230.43516142507608757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15770.37643969684311035No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14840.354240019096497No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14130.3372918780211255No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG12110.28907322313063194No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11900.2840603926717193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11900.2840603926717193No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9330.2227128961031211No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9230.22032583397982933No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8690.20743569851405386No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8650.2064808736647371No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8590.2050486363907621No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8230.19645521274691174No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8190.19550038789759505No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7570.18070060273318614No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7500.1790296592468819No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7370.17592647848660262No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7340.17521035984961508No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6990.16685564241809395No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6900.16470728650713135No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6580.15706868771259772No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6250.14919138270573493No Hit
ACCCGCCACATTGACGCAAAAGCAGTTTACG5880.14035925284955542No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5790.13821089693859281No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5490.13104971056871756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5420.12937876708241333No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5280.12603688010980485No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4910.11720475025362535No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4580.10932744524676254No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4390.10479202721250822No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4200.10025660917825387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)