FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446021
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25840.5793449187370101No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24450.5481804668390053No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20920.46903621129946793No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19670.44101062506025507No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18360.41163981068155986No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17130.3840626338221743No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15670.3513287490947736No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14650.3284598707235758No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13830.3100750861506521No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12940.2901208687483325No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA12690.2845157515004899No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11430.2562659605713632No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9400.21075240851888138No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8970.20111160685259213No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8930.20021478809293733No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8930.20021478809293733No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8870.1988695599534551No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8590.1925918286358714No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8320.18653830200820143No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7870.17644909096208475No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7840.17577647689234363No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7650.17151658778398327No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6360.14259418278511551No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6360.14259418278511551No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6280.14080054526580588No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6100.1367648608473592No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5670.12712405918106995No Hit
CAGGATCATCAGGCAATCGGCCAGAGCGCGATGAGCACCCGCAG5630.12622724042141514No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5620.12600303573150143No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5480.12286417007270958No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5020.11255075433667922No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4900.10986029805771476No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4790.10739404646866403No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4540.10178892922082143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)