FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446021
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44590.9997287123252044No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32680.7327009266379834No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26550.5952634517208831No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20860.46769098315998575No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19270.43204243746370685No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17250.38675309010113873No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15870.35581284289304765No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15220.34123953804865687No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13710.3073846298716877No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG13240.2968470094457436No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12920.28967245936850505No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9810.21994480080534326No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9640.21613332107681027No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9440.21164922727853622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9310.20873456630965806No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9150.2051472912710388No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8980.20133581154250588No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8970.20111160685259213No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8750.19617910367449065No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7880.17667329565199846No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7870.17644909096208475No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7800.17487965813268883No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7720.1730860206133792No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7650.17151658778398327No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7370.16523885646639955No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7080.15873692045890217No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6180.13855849836666884No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6100.1367648608473592No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6000.1345228139482222No Hit
ACCCGCCACATTGACGCAAAAGCAGTTTACG5960.13362599518856735No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5800.1300387201499481No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5540.12420939821219179No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4890.10963609336780107No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4830.10829086522831885No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4780.10716984177875032No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4650.10425518080987219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)