FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396758
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13250.33395671920919046No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8970.22608239783444822No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6560.16534008135941808No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5480.1381194582087822No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5230.13181838803502388No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4720.11896420488055691No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC4050.10207733681488465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)