FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396758
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17150.4322534139198202No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13090.32992403429798517No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12490.31480146588096525No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6300.15878696837870945No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5560.14013580066438483No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5490.1383715010157325No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5090.1282897887377192No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4880.12299688979176224No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC4090.10308550804268596No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4070.10258142242878532No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4000.10081712278013298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)