FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381975
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54841.4356960534066365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26500.6937626808037175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC24440.639832449767655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21650.5667910203547353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20970.5489888081680738No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19080.4995091301786766No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17910.4688788533280974No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14410.3772498200143989No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14280.3738464559198901No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12560.32881733097715815No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11930.3123241049806924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10570.2767196806073696No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9000.23561751423522484No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8970.2348321225211074No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.19137378100661037No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6530.17095359643955757No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6480.16964461024936187No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6210.16257608482230512No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6210.16257608482230512No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT5760.1507952091105439No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5270.13796714444662608No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5240.13718175273250868No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5190.13587276654231298No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5110.13377838863799987No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG4640.12147391845016035No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4610.12068852673604294No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4530.11859414883172983No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4470.117023365403495No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4430.11597617645133843No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4210.11021663721447739No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4130.10812225931016428No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3920.10262451731134237No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC3910.10236272007330323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)