FastQCFastQC Report
Wed 31 May 2023
EGAF00007946304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398947
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53211.3337611261646283No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31040.7780482119178738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13310.3336282764377223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13180.33036969823059203No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9670.24238808663807473No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7890.1977706311865987No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4890.12257267256051554No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4720.11831145490503751No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4660.11680749573251585No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4310.1080344005594728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)