FastQCFastQC Report
Sun 21 May 2023
EGAF00007946306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418806
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45811.0938238707181847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26980.6442123560789482No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22730.5427333896840064No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21830.5212437262121364No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16670.3980363223067483No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15800.3772629809506072No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15160.36198144248172187No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14610.3488488703600235No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13360.3190021155379818No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12560.2999001924518751No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12100.28891658667736375No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10050.23996790876921534No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC8140.19436206740113562No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8010.19125800489964326No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8000.19101923086106692No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7920.18910903855245625No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7750.18504987989665858No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7470.17836420681652126No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6690.15973983180756723No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6640.15854596161468557No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6320.1509051923802429No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6270.14971132218736122No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6010.14350319718437654No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6000.1432644231458002No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5840.13944403852857887No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5550.1325195914098652No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5250.12535637025257518No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5220.12464004813684618No Hit
CCGGCTGCCTCCCCGCCGCGTACCCCTGCCT4670.11150747601514782No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4600.10983605774511349No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4320.10315038466497614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)