FastQCFastQC Report
Wed 31 May 2023
EGAF00007946307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417108
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA35150.8427074043173471No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24480.5868983572599902No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21840.5236053971633247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21840.5236053971633247No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9950.23854733066735714No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC9800.23495113975277385No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9080.21768942336277416No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7800.18700192755833023No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7760.18604294331444135No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6790.16278757540013616No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6330.15175925659541414No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6320.1515195105344419No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5970.1431283984004143No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5880.1409706838516643No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5430.1301821111079145No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5330.1277846504981923No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5210.12490769776652569No Hit
GGATTCCTTCAGCAGGTTCACCTGTTCGCAGATCTGGTTGGTAA5050.1210717607909702No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4830.11579734744958141No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4730.11339988683985922No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4410.10572801288874824No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4340.10404979046194271No Hit
TTCGCAAATCTGGTTGGTGAAACCGGAGCCAAACGCGTTGCCCA4310.10333055227902604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)