FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424337
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37210.8768973716645025No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27710.6530187091863306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17590.41452901820958343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15390.36268343321463836No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12640.2978764519709571No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11850.2792591737227722No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7910.18640844423182518No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7680.18098822398235365No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6880.16213528398419183No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5770.13597682973674224No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5600.13197057998713288No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4640.10934705198933867No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4630.10911139023936163No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4490.10581212573968332No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4420.10416249348984416No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4250.10015624374023477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)