FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381324
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28680.7521163105390691No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18110.47492421143174834No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16720.43847227030032204No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15000.39336627120244205No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14570.382089771427972No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14440.37868059707755086No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14380.3771071319927411No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13560.3556031091670076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12370.32439605165161384No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12250.3212491214819943No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12100.3173154587699699No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11590.3039410055490869No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11410.2992206102946576No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11330.29712265684824457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10950.2871573779777827No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10340.2711604829488834No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9150.23995342543348966No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG8480.22238306531978058No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8370.21949837933096264No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7320.1919627403467917No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7310.19170049616599008No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7040.18461990328434613No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC6790.17806379876430542No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6640.174130136052281No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6570.1722944267866696No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG6360.1667872989898354No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6180.1620669037354061No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6160.16154241537380284No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6150.16128017119300123No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6120.16049343865059634No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5580.14633225288730844No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5380.14108736927127585No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5240.13741595074005306No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5200.13636697401684655No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4850.1271884276887896No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4760.12482823006157494No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG4550.11932110226474074No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4460.11696090463752609No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCA4170.10935582339427889No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4140.108569090851874No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4080.10699562576706424No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4060.10647113740546096No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG3900.10227523051263493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)