FastQCFastQC Report
Wed 31 May 2023
EGAF00007946319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455600
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19950.43788410886742757No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14130.3101404741000878No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13980.30684811237928006No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13680.30026338893766463No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10120.2221246707638279No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG9930.21795434591747148No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9910.2175153643546971No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT9770.21444249341527655No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9390.20610184372256368No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA8710.1911764705882353No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7710.16922739244951712No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7440.16330114135206322No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7070.15517998244073747No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6870.15079016681299387No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6510.1428884986830553No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6350.1393766461808604No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6280.13784021071115013No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6190.1358647936786655No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5840.12818261633011413No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5730.12576821773485514No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5680.12467076382791922No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5330.11698858647936786No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5200.11413520632133452No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5190.11391571553994732No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5110.11215978928884986No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5060.11106233538191396No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4990.10952589991220368No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4920.10798946444249341No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4870.10689201053555751No Hit
AGTGATATCGTCCTGCGTACGGCGAACGTCCTGCTTGTACAGTT4670.10250219490781387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)