FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492208
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32630.6629311185515067No Hit
TTCCATGGCTTTAGCAGTGGTAGACGCCAGAACCATACGGTTTT17390.35330591944868833No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13890.2821977700484348No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13310.27041413386210705No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT12970.26350648506322527No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT11790.2395328804082827No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC11640.23648538829112897No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11180.2271397457985242No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10430.2119022852127556No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10270.2086516269544583No Hit
CAGGACCATACGGTTTTCGTGACGGATCAGCGGGTTGGTAGTGG9960.20235347657900724No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9780.19869648603842277No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9170.1863033514286643No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8780.17837987192406463No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8540.17350388453661866No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8140.1653772388908754No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7610.15460943341026556No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7320.1487176153171017No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7240.14709228618795306No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7130.14485745863537366No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6620.13449598543705102No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6610.13429281929590742No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6350.1290104996261743No Hit
GGACGGGTGGGTACCGATAGTACGCATGGCCTGCACCATTTGGC6080.12352501381529761No Hit
CGGCTTAACCGCGATGGAACGGCGGCGACGACGGCCAGCGTATA6000.12189968468614895No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5960.12108702012157463No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5840.11864902642785165No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5820.11824269414556449No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5620.11417937132269283No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5510.11194454377011344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)