FastQCFastQC Report
Wed 31 May 2023
EGAF00007946322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492208
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32330.6568361343171992No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28940.5879628124695251No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG17490.3553375808601242No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15780.3205961707245717No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15110.30698403926795176No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG13150.26716347560380976No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12180.24745635991288237No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC11850.24075187725514416No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC11590.23546955758541105No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10640.21616877417677077No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10250.20824529467217112No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG9850.20011864902642787No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9740.19788382147384845No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9110.1850843545818028No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8820.17919253648863895No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8690.1765513766537724No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8340.16944056171374705No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8000.16253291291486524No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7840.15928225465656795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7380.1499366121639632No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7180.14587328934109156No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7040.14302896336508142No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6480.13165165946104088No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6420.13043266261417938No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6380.12961999804960506No Hit
CCGCTGATTCGTCACGAAAACCGTATGGTTC6250.1269788382147385No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6200.1259630075090206No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG5650.11478886974612358No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5620.11417937132269283No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5570.11316354061697492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)