FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403644
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27640.6847618198214268No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19840.4915222324622688No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT17710.4387529605295756No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13660.3384170209392435No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12470.30893559671393606No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11920.2953097283745082No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11590.28713420737085155No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11390.28217934615651413No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10910.27028767924210445No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10180.252202435809773No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9670.23956753971321262No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9430.23362170625600776No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8830.2187571226129956No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8810.21826163649156186No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8290.20537899733428466No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8220.20364479590926657No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8040.19918542081636295No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7430.1840730941126339No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7180.17787951759471218No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG7020.17391562862324228No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6830.16920851046962174No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6750.16722656598388677No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6220.15409618376589274No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6110.15137101009800716No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5840.14468194745865168No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5790.14344323215506732No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5460.13526771115141065No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5410.1340289958478263No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5290.13105607911922387No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5140.12733993320847084No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5100.12634896096560336No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5090.1261012179048865No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4890.1211463566905491No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4810.11916441220481415No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4650.11520052323334425No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA4610.11420955099047676No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4550.11272309262617554No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4490.11123663426187433No Hit
CAGATTTTCTTCGTGTGCGTCCACGTTGTTATGGTTGTAGGAGT4250.10529080080466946No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG4140.1025656271367839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)