FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535338
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC19780.36948619376917013No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17620.32913785309468035No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17420.3254018956248202No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16530.3087768848839425No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10140.18941304372191026No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9840.18380910751712No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8250.15410824563173173No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG7130.1331868838005148No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6280.11730906455360912No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5520.10311242616814051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)