FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551147
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25880.46956619558847273No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG20870.3786648571070876No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTC18930.3434655364176889No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17450.31661244640721986No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16750.30391166059145747No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16590.3010086238335689No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16330.296291189102No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16220.29429535133095164No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15220.2761513715941482No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14650.26580930314417023No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG14280.259096030641553No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13250.24040773151264547No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12600.22861414468372324No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACA12550.22770694569688305No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11960.21700199765216904No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10710.19432202298116474No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9770.17726668202856952No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9060.16438445641543908No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9030.16384013702333497No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8660.1571268645207177No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTG8650.15694542472334969No Hit
GCAGACTGCCTGCACGAAAAATACGGTGGCC8480.1538609481680931No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8440.15313518897862097No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8390.15222798999178078No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8330.15113935120757258No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7410.13444688984971342No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7320.1328139316734011No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7290.132269612281297No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7260.1317252928891929No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6880.12483058058920761No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6830.12392338160236743No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6810.12356050200763136No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6730.12210898362868708No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6670.12102034484447889No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6630.12029458565500674No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6530.1184801876813264No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5850.10614228146030008No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5620.10196916612083527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)