FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511422
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG54781.0711310815725565No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT46460.908447426978112No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40620.7942560155800884No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA32450.6345053595660727No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG19900.38911114500353916No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA19630.38383174755876753No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC17310.33846803618147053No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG15070.29466859071373547No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT15020.2936909245202592No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13130.25673514240685774No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT11700.22877388927343761No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC10890.21293569693912268No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA9870.19299130659220762No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT9130.17852184692875941No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG8370.16366132078792076No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA8200.16033725573010155No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8090.15818639010445387No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8080.15799085686575862No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8070.15779532362706336No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8030.15701319067228237No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG7320.14313033072491993No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA7090.13863306623492927No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG6630.12963853725494798No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6440.1259234057197383No Hit
AACCTGACCGCGGAACTGGATAAAGTTAAAG6230.12181720770713814No Hit
CAGATCGTGATCAAAATTACCGATCAGGGTT6030.11790654293323323No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6010.11751547645584273No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5890.11516907759149977No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG5730.11204054577237585No Hit
GAAGTTCACACCATGGTTGTACAGCACAACA5670.11086734634020437No Hit
ATGGGTGTTGACATGGTCGAAATCGACCTGA5630.11008521338542339No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.10969414690803289No Hit
GGTGTTCCGGCGTCTACCTGGGCCGCAATCA5540.10832541423716618No Hit
GTATATAGCAACGTTGAAGTCACCAACGGCA5410.10578348213412798No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGA5230.10226388383761356No Hit
AAACTGGCAGGCAAATACACTACCGAGGACG5220.10206835059891832No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5140.10050408468935636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)