FastQCFastQC Report
Sun 21 May 2023
EGAF00007946336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543013
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45110.8307351757692726No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23790.4381110581146308No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15540.28618099382519385No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14380.26481870599783064No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13950.2568999268894115No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10850.19981105424732004No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10250.18876159502627007No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9460.17421314038522098No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9210.16960919904311683No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9020.16611020362311768No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8820.16242705054943435No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8780.1616904199346977No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8440.15542905970943605No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8220.1513775913283844No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7830.14419544283470193No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6910.12725293869575868No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.1130727993620779No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5510.10147086717997543No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5470.10073423656523878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)