FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501559
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20230.40334237846394944No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15860.31621404460890945No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11720.23367141253571364No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8160.16269272408629892No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7340.1463437003423326No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7010.13976421517707785No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5600.11165186947098946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)