FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501559
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42500.8473579379494736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39070.7789711678984925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17250.34392763363831574No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14990.29886812917323785No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6750.1345803783802105No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5440.1084618160575326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)