FastQCFastQC Report
Wed 31 May 2023
EGAF00007946340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585470
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26580.45399422686047103No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14880.2541547816284353No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12290.20991681896595898No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11820.20188908056774899No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11810.20171827762310623No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11370.19420294805882451No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11260.19232411566775412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10750.18361316549097306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9570.16345841802312672No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7860.1342511144892138No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6950.11870804652672214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)