FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506183
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT31310.6185509983543501No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA17030.3364395880541227No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15380.3038426814017855No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11330.22383209234604876No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT10620.20980554463504308No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10060.19874235207424984No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9920.1959765539340515No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9810.1938034268238957No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9670.1910376286836974No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT9070.17918420808284752No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8670.17128192768228093No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7960.15725537997127523No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7940.15686026595124689No Hit
GTGGTCACCGTTGGTGGAGGTGGTGCCGGAGAACGTATGGGTGT7790.1538969108010344No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7670.15152622668086443No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7570.14955065658072278No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6940.1371045649498304No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6540.1292022845492638No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6290.12426335929890968No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6060.11971954806858388No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5790.11438550879820145No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5660.1118172676680173No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5450.10766857045771984No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA5380.10628567138762068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)