FastQCFastQC Report
Sun 21 May 2023
EGAF00007946342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506183
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA31910.6304044189551999No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21750.42968649678080856No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC16330.3226105973531312No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16300.3220179263230887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12660.2501071746779327No Hit
GGCGACAAACAGAGCAACGTTGTCATCCAGA10900.21533714091543968No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10170.20091547918440564No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9740.19242052775379656No Hit
GAAAGCGCACTGGATTGGTTCCTGCGCCCGA9430.18629626044335745No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8770.17325749778242255No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8110.16021873512148768No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8070.15942850708143103No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7960.15725537997127523No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7890.15587248090117606No Hit
CACTCTGCTAGCGCATCTACCACCGCCCTGA7710.1523164547209211No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7570.14955065658072278No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7200.1422410472101987No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.14066059113008536No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6540.1292022845492638No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6450.12742427145913632No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5870.11596596487831476No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5780.11418795178818728No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5660.1118172676680173No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5600.11063192560793231No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5430.10727345643769151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)