FastQCFastQC Report
Sun 21 May 2023
EGAF00007946343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457320
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT32150.7030088340767953No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26150.5718096737514213No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25180.5505991428321526No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22360.4889355374792268No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21430.46859966762879385No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18230.39862678212192776No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18100.3957841336482113No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16160.35336307180967375No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14360.3140033237120616No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14170.3098486836350914No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13740.3004460771451063No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13520.2956354412665092No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11390.24905973935100148No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11300.24709175194612087No Hit
CGGCGCGGTCTGCAGACGGGATTTTGCAGAGGACGGGCTTTTCG10810.23637715385288202No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10500.22959853056940432No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10350.22631855156127No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10270.2245692294235984No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10170.2223825767515088No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9990.2184466019417476No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA9840.21516662293361322No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9690.21188664392547887No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9160.2002973847634042No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8970.19614274468643403No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8760.19155077407504592No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8680.18980145193737427No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8050.17602554010321No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7920.17318289162949357No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7900.17274556109507566No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC7860.17187090002623984No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7730.1690282515525234No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6770.14803638590046356No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6760.1478177206332546No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC6480.14169509315140383No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6450.14103909734977696No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6250.13666579200559784No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6240.13644712673838888No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6120.1338231435318814No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6080.13294848246304555No Hit
TTCAGAAGAACCCAGACGGTCTGCGTTGGAAATGTCGAACACGC6020.13163649085979182No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5860.12813784658444852No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5700.12463920230910523No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5430.11873524009446339No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5420.11851657482725443No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5220.1141432694830753No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5220.1141432694830753No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5090.11130062100935888No Hit
ACCTTCCTGCACACGCCAACGCTGCCAGGCCTCGAACAGGTGGG4660.10189801451937375No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4650.10167934925216478No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4640.10146068398495584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)