FastQCFastQC Report
Wed 31 May 2023
EGAF00007946346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483582
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39000.8064816308299315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11060.22870991889689857No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11010.22767596808814225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9220.19066052913466588No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6540.135240765785327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4880.1009135989346171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)