FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520206
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45080.8665797780110187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43040.8273645440460125No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8320.15993664048473105No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8300.15955217740664276No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5880.11303214495795896No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5520.10611180955236964No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5310.10207494723244252No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5280.10149825261531009No Hit
ATGCAGACCGCGACCCCGACCAACTTCAACG5250.10092155799817765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)