FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533019
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16120.30242824364609894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13270.2489592303463854No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10450.19605304876561622No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6650.12476103103266488No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6450.12100881957303586No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6120.11481767066464797No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6070.11387961779974072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)